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Misc Items

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AFNI/SUMA/FMRI Misc Items
Misc Items 3dDeconvolve Changes - Spring 2007
Several Small Things, and One Big Thing
Misc Items Notes on Parallelizing AFNI Programs (3dDeconvolve On FreeBSD)
Notes on increasing the shared memory limit on FreeBSD 5.x by Jason Bacon <jbacon@mcw.edu>
Misc Items Mapping Data to the Talairach Atlas
A sample script on how to map some numbers to brain regions, using the Talairach-Tournoux Atlas database. For example, put the value 0.379 in each hippocampus voxel, and the value 0.666 in each superior temporal gyrus voxel.
Misc Items FMRI Analysis - NIH Presentation - 31 Mar 2004
PowerPoint presentation given by RW Cox on 31 Mar 2004, outlining FMRI data analysis methods in a nontechnical way. You also need to download the animated GIF files that go with it.
Misc Items AFNI Colorscales
AFNI Colorscales
Misc Items Thoughts on Computational Toolsets for Neuroimaging
Thoughts on Computational Toolsets for Neuroimaging
Misc Items Notes on Parallelizing AFNI Programs
Notes on Parallelizing AFNI Programs
Misc Items User Written Extensions to AFNI (Plugins)
User Written Extensions to AFNI (Plugins)
Misc Items How to Program Realtime AFNI
How to Program Realtime AFNI
Misc Items PostScript notes on registration in FMRI
PostScript notes on registration in FMRI (somewhat old now - based on my presentation at HBM'96 in Boston).
Misc Items Creating Regions of Interest (ROI) in AFNI
Creating Regions of Interest (ROI) in AFNI
Misc Items 3dDeconvolve Speed Test
3dDeconvolve Speed Test
Misc Items The AFNI TTatlas+tlrc Dataset
The AFNI TTatlas+tlrc Dataset
Misc Items 3dDeconvolve -xjpeg Sample Image
8 runs X polort=1 gives 16 columns of baseline, followed by 8 columns of signal model regressors; there are 1424 time points (vertical axis)
Misc Items afni_build
How to Build AFNI/SUMA on your system (may be outdated)
Misc Items afni_download
AFNI/SUMA Download Techniques
Misc Items SUMA Installation
SUMA Installation
Misc Items SUMA Usage
SUMA Usage
Misc Items MTest
A Java page for scrolling through brain slices quickly (about 1 MB).
Misc Items MTest2
Another Java sample, this one with a rotating rendered brain volume (about 700 KB).
Misc Items AFNI Startup Manual
AFNI Startup Manual
Misc Items NIML Documentation
Documentation of the NIML format and C API (such as it is).
Misc Items Basis Function Suggestions
Suggested Choices for Basis Functions for use with -stim_times in 3Ddeconvolve
 

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