4. All program helps¶
- 4.1. Alphabetical list of program helps
- 4.2. Classified program list
- 4.2.1. Interactive viewer GUIs
- 4.2.2. Voxelwise calcs, esp. stats and tests
- 4.2.3. Get info/stats within ROIs
- 4.2.4. Build FMRI pipelines
- 4.2.5. Align/register/warp/axialize spatially
- 4.2.6. SUMA surface calculations, formats and viewing
- 4.2.7. Mask/skull-strip/segment
- 4.2.8. Make/edit/evaluate stimulus timing files
- 4.2.9. Edit dset headers
- 4.2.10. Compute various numbers from datasets
- 4.2.11. Blur and smooth dsets
- 4.2.12. Volume editing/image processing
- 4.2.13. Update AFNI, install software, check setup/info (not demos)
- 4.2.14. Simple dset calcs (-> make new dsets)
- 4.2.15. Resting state FMRI parameters
- 4.2.16. Region-wise group analysis
- 4.2.17. Make/edit correlation matrices
- 4.2.18. Make/edit ROIs and clusters, resample
- 4.2.19. Edit dsets: concatenate, split, add/remove slices
- 4.2.20. Drive AFNI/SUMA, make images/snapshots/montages
- 4.2.21. Deal with 1D time series
- 4.2.22. DWI/DTI/diffusion-related
- 4.2.23. Convert surfaces from other software
- 4.2.24. Convert statistics and p-values
- 4.2.25. Compare dset volumes (masks or valued)
- 4.2.26. Time series pre-processing
- 4.2.27. Time series analysis
- 4.2.28. Quality checks (for 3D+time datasets or results)
- 4.2.29. Miscellaneous file manipulations
- 4.2.30. MVM modelling of (correlational or structural) matrices
- 4.2.31. Interact with multi-echo data
- 4.2.32. Generate model 1D time series
- 4.2.33. Fourier related, time series/freq
- 4.2.34. Dset histograms
- 4.2.35. Download/install demos
- 4.2.36. DICOM info and conversion
- 4.2.37. Copy/convert/manipulate dsets
- 4.2.38. Changing dset spatial structure
- 4.2.39. Change dset temporal structure
- 4.2.40. Supplementary/open programs included in AFNI
- 4.2.41. Supplemental/underlying programs (no desc needed)
- 4.2.42. Simulate/generate dsets
- 4.2.43. Miscellaneous visualization tools
- 4.2.44. Miscellaneous utilities
- 4.2.45. Unclassed
- 4.2.46. Retired (no longer in the build)
- 4.2.47. R programs (written in R; called by other programss)