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Program Help

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AFNI Program Help
Program Help 1dcat: Usage: 1dcat a.1D b.1D ...
 
Program Help 1ddot: Usage: 1ddot [options] 1Dfile 1Dfile ...
 
Program Help 1deval: Usage: 1deval [options] -expr 'expression'
 
Program Help 1dfft: Usage: 1dfft [options] infile outfile
 
Program Help 1dgrayplot: Usage: 1dgrayplot [options] tsfile
 
Program Help 1dnorm: Usage: 1dnorm infile outfile
 
Program Help 1dplot: Usage: 1dplot [options] tsfile ...
 
Program Help 1dsvd
 
Program Help 24swap: Usage: 24swap [options] file ...
 
Program Help 2dImReg
 
Program Help 2swap
 
Program Help 3dAFNIto3D: Usage: 3dAFNIto3D [options] dataset
 
Program Help 3dAFNItoANALYZE: Usage: 3dAFNItoANALYZE [-4D] [-orient code] aname dset
 
Program Help 3dAFNItoMINC: Usage: 3dAFNItoMINC [options] dataset
 
Program Help 3dAFNItoNIFTI: Usage: 3dAFNItoNIFTI [options] dataset
 
Program Help 3dAFNItoNIML: Usage: 3dAFNItoNIML [options] dset
 
Program Help 3dANALYZEtoAFNI: Usage: 3dANALYZEtoAFNI [options] file1.hdr file2.hdr ...
 
Program Help 3dANOVA
 
Program Help 3dANOVA2
 
Program Help 3dANOVA3
 
Program Help 3dAnatNudge: Usage: 3dAnatNudge [options]
 
Program Help 3dAnhist: Usage: 3dAnhist [options] dataset
 
Program Help 3dAttribute: Usage: 3dAttribute [options] aname dset
 
Program Help 3dAutoTcorrelate: Usage: 3dAutoTcorrelate [options] dset
 
Program Help 3dAutobox: Usage: 3dAutobox dataset
 
Program Help 3dAutomask: Usage: 3dAutomask [options] dataset
 
Program Help 3dBRAIN_VOYAGERtoAFNI: Usage: 3dBRAIN_VOYAGERtoAFNI -input BV_VOLUME.vmr
 
Program Help 3dCM: Usage: 3dCM [options] dset
 
Program Help 3dCRUISEtoAFNI: Usage: 3dCRUISEtoAFNI -input CRUISE_HEADER.dx
 
Program Help 3dClipLevel: Usage: 3dClipLevel [options] dataset
 
Program Help 3dConvolve
 
Program Help 3dDTeig: Usage: 3dDTeig [options] dataset
 
Program Help 3dDWItoDT: Usage: 3dDWItoDT [options] gradient-file dataset
 
Program Help 3dDeconvolve
 
Program Help 3dDeconvolve_f
 
Program Help 3dDespike: Usage: 3dDespike [options] dataset
 
Program Help 3dDetrend: Usage: 3dDetrend [options] dataset
 
Program Help 3dEntropy: Usage: 3dEntropy dataset ...
 
Program Help 3dExtrema: Usage: 3dExtrema options datasets
 
Program Help 3dFDR: Usage: 3dFDR [options] dataset
Program Help 3dFWHM: Usage: 3dFWHM -dset dataset
Program Help 3dFourier: Usage: 3dFourier [options] dataset
 
Program Help 3dFriedman
 
Program Help 3dIntracranial
 
Program Help 3dKruskalWallis
 
Program Help 3dLRflip: Usage: 3dLRflip [-prefix ppp] dataset
 
Program Help 3dMINCtoAFNI: Usage: 3dMINCtoAFNI [-prefix ppp] dataset.mnc
 
Program Help 3dMannWhitney
 
Program Help 3dMax: Usage: 3dMax [options] dataset
 
Program Help 3dMean: Usage: 3dMean [options] dset dset ...
 
Program Help 3dMedianFilter: Usage: 3dMedianFilter [options] dataset
 
Program Help 3dNLfim
 
Program Help 3dNotes: Usage: 3dNotes [-a "string"] [-h "string"][-d num] [-help] dataset
 
Program Help 3dOverlap: Usage: 3dOverlap [options] dset1 dset2 ...
 
Program Help 3dROIstats: Usage: 3dROIstats -mask[n] mset [options] datasets
 
Program Help 3dRegAna
 
Program Help 3dRowFillin: Usage: 3dRowFillin [options] dataset
 
Program Help 3dSkullStrip
 
Program Help 3dSpatNorm: Usage: 3dSpatNorm [options] dataset
 
Program Help 3dStatClust: Usage: 3dStatClust options datasets
 
Program Help 3dSurf2Vol: usage: 3dSurf2Vol [options] -spec SPEC_FILE -surf_A SURF_NAME
 
Program Help 3dSurfMask: Usage: 3dSurfMask <-i_TYPE SURFACE> <-prefix PREFIX>
 
Program Help 3dSurfMaskDump
 
Program Help 3dTSgen
 
Program Help 3dTagalign: Usage: 3dTagalign [options] dset
 
Program Help 3dTcat
 
Program Help 3dTcorrelate: Usage: 3dTcorrelate [options] xset yset
 
Program Help 3dThreetoRGB: Usage #1: 3dThreetoRGB [options] dataset
 
Program Help 3dToutcount: Usage: 3dToutcount [options] dataset
 
Program Help 3dTqual: Usage: 3dTqual [options] dataset
 
Program Help 3dTshift: Usage: 3dTshift [options] dataset
 
Program Help 3dTsmooth: Usage: 3dTsmooth [options] dataset
 
Program Help 3dTstat: Usage: 3dTstat [options] dataset
 
Program Help 3dUndump: Usage: 3dUndump [options] infile ...
 
Program Help 3dUniformize
 
Program Help 3dVol2Surf: usage: 3dVol2Surf [options] -spec SPEC_FILE -sv SURF_VOL
 
Program Help 3dWarp: Usage: 3dWarp [options] dataset
 
Program Help 3dWarpDrive: Usage: 3dWarpDrive [options] dataset
 
Program Help 3dWavelets
 
Program Help 3dWilcoxon
 
Program Help 3dWinsor: Usage: 3dWinsor [options] dataset
 
Program Help 3dZcat: Usage: 3dZcat [options] dataset dataset ...
 
Program Help 3dZcutup: Usage: 3dZcutup [options] dataset
 
Program Help 3dZeropad: Usage: 3dZeropad [options] dataset
 
Program Help 3dZregrid: Usage: 3dZregrid [option] dataset
 
Program Help 3daxialize: Usage: 3daxialize [options] dataset
 
Program Help 3dbuc2fim: Usage: 3dbucket options
 
Program Help 3dbucket
 
Program Help 3dcalc
 
Program Help 3dclust: Usage: 3dclust [editing options] [other options] rmm vmul dset ...
 
Program Help 3dcopy: Usage 1: 3dcopy [-verb] [-denote] old_prefix new_prefix
 
Program Help 3ddelay
 
Program Help 3ddot: Usage: 3ddot [options] dset1 dset2
 
Program Help 3ddup: Usage: 3ddup [options] dataset
 
Program Help 3dfimplus
 
Program Help 3dfim: Usage: 3dfim [-im1 num] -input fname -prefix name
 
Program Help 3dfractionize
 
Program Help 3dhistog: Usage: 3dhistog [editing options] [histogram options] dataset
 
Program Help 3dinfo: Usage: 3dinfo [-verb OR -short] dataset [dataset ...]
 
Program Help 3dmaskave
 
Program Help 3dmaskdump
 
Program Help 3dmerge
 
Program Help 3dnewid
 
Program Help 3dnoise: Usage: 3dnoise [-blast] [-snr fac] [-nl x ] datasets ...
 
Program Help 3dnvals
 
Program Help 3dpc
 
Program Help 3dproject
 
Program Help 3drefit
 
Program Help 3drename
 
Program Help 3dresample
 
Program Help 3dretroicor
 
Program Help 3drotate
 
Program Help 3dttest
 
Program Help 3dvolreg
 
Program Help 4swap
 
Program Help 4Daverage
 
Program Help Align_Centers
 
Program Help CommandGlobb
 
Program Help GetAfniPrefix
 
Program Help GetAfniView
 
Program Help NoExt
 
Program Help RenamePanga
 
Program Help SUMA_AlignToExperiment
 
Program Help SUMA_Make_Spec_FS
 
Program Help SUMA_Make_Spec_SF
 
Program Help UpdateAfni
 
Program Help make_stim_file
 
Program Help AlphaSim
 
Program Help CompareSurfaces
 
Program Help ConvertDset
 
Program Help ConvertSurface
 
Program Help ConvexHull
 
Program Help CreateIcosahedron
 
Program Help FD2
 
Program Help FSread_annot
 
Program Help Ifile
 
Program Help Imon
 
Program Help IsoSurface
 
Program Help MakeColorMap
 
Program Help MapIcosahedron
 
Program Help ROI2dataset
 
Program Help RSFgen
 
Program Help SampBias
 
Program Help ScaleToMap
 
Program Help SurfClust
 
Program Help SurfMeasures
 
Program Help SurfMesh
 
Program Help SurfPatch
 
Program Help SurfQual
 
Program Help SurfSmooth
 
Program Help SurfToSurf
 
Program Help SurfaceMetrics
 
Program Help Vecwarp
 
Program Help Xphace
 
Program Help abut
 
Program Help adwarp
 
Program Help afni
afni
Program Help afni_vcheck
 
Program Help aiv
 
Program Help byteorder
 
Program Help cat_matvec
 
Program Help ccalc
 
Program Help cdf
 
Program Help cjpeg
 
Program Help count
 
Program Help dicom_hdr
 
Program Help dicom_to_raw
 
Program Help djpeg
 
Program Help ent16
 
Program Help fftest
 
Program Help file_tool
 
Program Help fim2
 
Program Help float_scan
 
Program Help from3d
 
Program Help ftosh
 
Program Help ge_header
 
Program Help imand
 
Program Help imaver
 
Program Help imcalc
 
Program Help imcutup
 
Program Help imdump
 
Program Help immask
 
Program Help imreg
 
Program Help imrotate
 
Program Help imstack
 
Program Help imstat
 
Program Help imupsam
 
Program Help inspec
 
Program Help mayo_analyze
 
Program Help mpeg_encode
 
Program Help mpegtoppm
 
Program Help mritopgm
 
Program Help nifti1_test
 
Program Help nifti_stats
 
Program Help nifti_tool
 
Program Help nsize
 
Program Help p2t
 
Program Help plugout_drive
 
Program Help plugout_ijk
 
Program Help plugout_tt
 
Program Help quickspec
 
Program Help rmz
 
Program Help rotcom
 
Program Help rtfeedme
 
Program Help serial_helper
 
Program Help sfim
 
Program Help siemens_vision
 
Program Help sqwave
 
Program Help strblast
 
Program Help suma
 
Program Help suma_change_spec
 
Program Help tfim
 
Program Help to3d
 
Program Help waver
 
Program Help whereami
 
Program Help whirlgif
 
 

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