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aclark's Home
A good reference for the FDR
aclark's Docs
AFNI + NIfTI-1 changes
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Alex Clark, Contractor
event.2005-08-31.5628276256
Exciting!
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Modifications in 3dANOVA2
Monkey Business
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Recent AFNI Changes - Aug 2005
AFNI Man and Woman
bpittman's Home
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dglen's Home
Aligned EPI data over anat - pre and post alignment
Aligned EPI data over anat edges
Aligned EPI data over anat edges
Alignment of EPI data across two sessions
Anisotropic smoothed B0 data
Anisotropic smoothing of DWI data
Anisotropically Smoothed B0 data
Atlases in AFNI - framework
Cardinal to Oblique transformed anatomical data
Compiled Matlab Applications in AFNI
Compiling DTI-Query
Daniel Glen
Dealing with Obliquity in AFNI
Diffusion Tensor Estimation Method
DTI fiber volume
DTI fibers spin up and down
DTI Query Binary Files
DTI Query on Mac Screenshot
DTI-Query tractography available
Funniest NIMH Poem Contest 2006
Home page for dglen
Integration of AFNI with DTI-Query
McRetroTS - Matlab compiled version of retroTS.m
Oblique to Cardinal transformed EPI
Obliquity in AFNI
Original DWI B0 data
Original DWI B0 data
Personal Items for dglen
Unaligned EPI data over anat edges
Unaligned EPI data over anat edges - Green
Vascular Rendering
Vascular Rendering 2
doucettr's Home
Home page for doucettr
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gangc's Home
1dSEMr: an R program for path analysis
1dSVAR: an R program for structural vector autoregression
3dRegAna
A Copy of Commands for Running Group Analysis
acontr-n1
acontr-n2
acontr-n3
acontr-o1
acontr-o2
acontr-o3
amean-n1
amean-n2
amean-n3
amean-o1
amean-o2
amean-o3
ANCOVA
ANOVA
Bivariate Auto-Regressive Modeling
Build R
Conference publications
Conjunction Analysis
Context-Dependent Correlation Analysis
Context-Dependent Correlation Analysis or Generalized PPI
Context-Dependent Correlation Analysis or Generalized PPI
Correlation Analysis (aka functional connectivity)
Data Analysis of Individual Subject
document.2006-05-08.9691592891
Download the Matlab script
Fig1
Fig2
Fig2
Fig3
Gang Chen QR
Gang Chen's Home Page
GangChenQR
General Linear Testing in Group Analysis
Granger Causality Analysis
Group Analysis with Unbalanced Designs
HBM_Poster_2013
HBMabstract2010.pdf
Help
How to check model fitting in individual subject analysis
How to contruct matrices for main effects and interactions
How to convert t-statistic to correlation coefficient or the other way around?
How to find out the degrees of freedom in an AFNI file?
How to run group analysis when BOLD response is modeled with multiple basis functions
Improvements in 3dANOVA3
Independent Component Analysis
Interface for Running Group Analysis
Intra-Class Correlation with ANOVA method
Intra-Class Correlation with REML Method
Introduction
Journal papers
Kolmogorov–Smirnov test
Linear Mixed-Effects Modeling
Linear Mixed-Effects Modeling
Miscellaneous stuff
Mixed-Effects Meta Analysis (MEMA)
mu.gif
Multiple testing correction
Multivariate Auto-Regressive Modeling
Multivariate modeling approach for group analysis
Multivariate Time Series Analysis
One-Way within-Subject ANOVA without Constant
Personal Items for gangc
QR Code
QR Code
Recent Modifications in ANOVA Programs
Scaling and Percent Signal Change
SEMscript.csh
Simple Correlation Analysis
Simple effect testing at group analysis level
Spatial normalization: before or after individual subject analysis?
Sphericity
Statistics For Fun
Structural Equation Modeling
Structural Equation Modeling (SEM) or Path Analysis
The Basics of FMRI Group Analysis
Trend Analysis
Types of Sums of Squares
When and how to center a variable?
hjoon's Home
Home page for hjoon
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Information about the SSCC
Posters
HBM 2006 Poster - Christidis
HBM 2006 Poster - Cox
HBM 2006 Poster - Saad
HBM 2007 Poster - Chen
HBM 2007 Poster - Cox
HBM 2007 Poster - Saad
HBM 2008 Poster - Cox
HBM2003_christidis.jpg
HBM2003_christidis.pdf
HBM2003_christidis.ppt
HBM2003_christidis_thumb.jpg
HBM2003_cox.jpg
HBM2003_cox.pdf
HBM2003_cox.ppt
HBM2003_cox_thumb.jpg
HBM2003_saad.jpg
HBM2003_saad.pdf
HBM2003_saad.ppt
HBM2003_saad_thumb.jpg
ISMRM 2002 Poster by RWCox
ISMRM Poster 2007 - Cox
NIMH_Retreat_poster_v1.png
NIMH_Retreat_poster_v1.ppt
NIMH_Retreat_poster_v1_head.png
Retreat_Poster_v3.png
Retreat_Poster_v3.ppt
Retreat_Poster_v3_head.png
Presentations
3danisosmooth
3danisosmooth PDF
Cox IRP Talk Jun 2007
Diffusion Tensor Estimation Method
Diffusion Tensor Estimation Method
MRI and Neuroanatomy
ptaylor's Home
Home page for ptaylor
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rhammett's Home
Personal Items for rhammett
Rich Hammett
rickr's Home
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Rick Reynolds
rwcox's Home
AFNI Code Commentary
Barney - slice #3
Cox's Brain Blog
CV for Robert W Cox
CV for Robert W Cox
HBM 2007 Abstracts
Personal Items for rwcox
RW Cox Abstracts
RW Cox papers
RW Cox Posters
RW Cox Presentations
RW Cox's Home Page
SSCC Web Log
AFNI and SUMA new features - April 2005
AFNI and SUMA New Features - July 2005
AFNI and SUMA new features - May 2005
AFNI Cheat Sheet - 1
AFNI Cheat Sheet - 2
Recent AFNI Changes - Aug 2005
Recent AFNI Changes - Dec 2005
Regression with Event-dependent Amplitudes
Staff Directory
ziad's Home
Millenium Park, 07
Munch
Munch
Perrty_surf.tiff
Personal Items for ziad
latest compile date
25 Feb 2025 00:31 EST
latest afni version
AFNI_25.0.07
News
Tutorial: Single Subject Analysis
2010-07-30
Obliquity in AFNI
2007-05-30
HBM 2007 Abstracts
2007-01-18
Structural Equation Modeling
2007-01-18
auto script creation
2007-01-05
More...
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