@thickness_master
usage:
@thickness_master -maskset maskset -surfset surfacedset.gii -outdir basethickdir
where maskset is the dataset to find thickness
using the largest non-zero value in the mask.
If dataset has values -2,-1 and 1 for different regions, this script
calculates the thickness only for voxels with a value of 1
surfset is a surface to use to find normals into the volume
outdirbase is in directory thickdirbase_.... If not specified, the default is thick
This script calls the three types of thickness scripts
@measure_bb_thick - ball and box method
@measure_erosion_thick - erosion method
@measure_in2out_thick - in2out method
Main options:
-maskset mydset mask dataset for input
-surfset mydset.gii surface dataset onto which to map thickness
(probably a pial/gray matter surface)
-outdir thick_base output directory basename. The output will be placed
in a directory with thick_base in its name:
mmmm_bb, mmmm_erode, mmmm_in2out
Other options:
takes all options from the three @measure_... scripts
Output:
see Output section of help for each of the method scripts
This script produces a quick visualization script to see
thickness maps in suma for all three methods
See related scripts and programs for computing thickness:
