Interface for Running Group Analysis
>> GroupAna
Please read the following carefully about group analysis setup:
1. If the resolution of your EPI data is near n millimeters, during Talairach conversion use
"the command adwarp -dxyz n" to greatly reduce runtime without sacrificing accuracy.
2. We strongly suggest that factor names be labeled with short (2 or 3 capital letters) names
so that subbrik labels can be shown on AFNI viewer.
3. With nesting, arrange your design in such a way that the last factor is nested within the 1st factor.
4. Each input file should include only one subbrik. We suggest files be
named by reflecting the hierarchy of the experiment design.
5. Currently all of the following terms are modeled: main effects and applicable interactions in various orders, .
6. One covariate is currently allowed in the analysis, which should be in the format of one-column text file.
The column length has to be the same as the total number of input files.
How many factors? 4
Availabe design types:
Type 1: Factorial (crossed) design AXBXCXD - all 4 factors are fixed.
Type 2: Factorial (crossed) design AXBXCXD - only factor D is random. If D is subject it is also
called 3-way design with all 3 factors A, B, and C varying within subject.
Type 3: Mixed design BXCXD(A)- only the nested (4th) factor (usually subject) is random.
Also called 3-way design with factors B and C varying within subject and factor A between subjects.
Type 4: Mixed design BXCXD(A)- D is nested within A, but only the 3rd factor (usually subject)
is random.
Type 5: Mixed design CXD(AXB) - only the nested (4th) factor (usually subject) is random,
but factor D is nested within both factors A and B. If D is subject it is also called 3-way
design with factor D varying within-subject and factors A and B between-subjects.
Notice: This is NOT an exhaustive list of design types for 4-way ANOVA. Other types might be implemented upon request.
Choose design type (1, 2, 3, 4, 5, ...): 3
Is the design balanced? (1 - Yes; 0 - No) 0
Two unbalanced designs are currently allowed: When random factor (subject) is nested within another factor A,
each level of factor A contains a unique and unequal number of subjects -
(1) 3-way ANOVA type 3: BXC(A)
(2) 4-way ANOVA type 3: BXCXD(A)
Does your unbalanced design belong to either of the above types? (1 - Yes; 0 - No) 1
Label for No. 1 factor: Sex
How many levels does factor A (Sex) have? 2
Label for No. 1 level of factor A (Sex) is: male
Label for No. 2 level of factor A (Sex) is: female
Label for No. 2 factor: CN
How many levels does factor B (CN) have? 2
Label for No. 1 level of factor B (CN) is: C1
Label for No. 2 level of factor B (CN) is: C2
Label for No. 3 factor: EM
How many levels does factor C (EM) have? 3
Label for No. 1 level of factor C (EM) is: P
Label for No. 2 level of factor C (EM) is: U
Label for No. 3 level of factor C (EM) is: N
Label for No. 4 factor: Subject
How many levels does factor D (Subject) corresponding to level 1 (male) of factor A (Sex) have? 10
Label for No. 1 level of factor D (Subject) in group 1 of factor A (Sex) is: S1
Label for No. 2 level of factor D (Subject) in group 1 of factor A (Sex) is: S2
Label for No. 3 level of factor D (Subject) in group 1 of factor A (Sex) is: S3
Label for No. 4 level of factor D (Subject) in group 1 of factor A (Sex) is: S4
Label for No. 5 level of factor D (Subject) in group 1 of factor A (Sex) is: S5
Label for No. 6 level of factor D (Subject) in group 1 of factor A (Sex) is: S6
Label for No. 7 level of factor D (Subject) in group 1 of factor A (Sex) is: S7
Label for No. 8 level of factor D (Subject) in group 1 of factor A (Sex) is: S8
Label for No. 9 level of factor D (Subject) in group 1 of factor A (Sex) is: S9
Label for No. 10 level of factor D (Subject) in group 1 of factor A (Sex) is: S10
How many levels does factor D (Subject) corresponding to level 2 (female) of factor A (Sex) have? 9
Label for No. 1 level of factor D (Subject) in group 2 of factor A (Sex) is: S11
Label for No. 2 level of factor D (Subject) in group 2 of factor A (Sex) is: S12
Label for No. 3 level of factor D (Subject) in group 2 of factor A (Sex) is: S13
Label for No. 4 level of factor D (Subject) in group 2 of factor A (Sex) is: S14
Label for No. 5 level of factor D (Subject) in group 2 of factor A (Sex) is: S15
Label for No. 6 level of factor D (Subject) in group 2 of factor A (Sex) is: S16
Label for No. 7 level of factor D (Subject) in group 2 of factor A (Sex) is: S17
Label for No. 8 level of factor D (Subject) in group 2 of factor A (Sex) is: S18
Label for No. 9 level of factor D (Subject) in group 2 of factor A (Sex) is: S19
Enter the number of observations per cell (treatment or factor level combination): 1
Any covariate (concomitant variable)? (1 - Yes; 0 - No) 0
All input files are supposed to contain only one subbrik.
There should be totally 114 input files.
Correct? (1 - Yes; 0 - No) 1
(1) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_0+tlrc.BRIK
(2) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_0+tlrc.BRIK
(3) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_0+tlrc.BRIK
(4) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_0+tlrc.BRIK
(5) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_0+tlrc.BRIK
(6) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_0+tlrc.BRIK
(7) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_0+tlrc.BRIK
(8) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_0+tlrc.BRIK
(9) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_0+tlrc.BRIK
(10) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_0+tlrc.BRIK
(11) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_1+tlrc.BRIK
(12) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_1+tlrc.BRIK
(13) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_1+tlrc.BRIK
(14) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_1+tlrc.BRIK
(15) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_1+tlrc.BRIK
(16) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_1+tlrc.BRIK
(17) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_1+tlrc.BRIK
(18) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_1+tlrc.BRIK
(19) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_1+tlrc.BRIK
(20) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_1+tlrc.BRIK
(21) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_2+tlrc.BRIK
(22) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_2+tlrc.BRIK
(23) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_2+tlrc.BRIK
(24) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_2+tlrc.BRIK
(25) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_2+tlrc.BRIK
(26) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_2+tlrc.BRIK
(27) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_2+tlrc.BRIK
(28) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_2+tlrc.BRIK
(29) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_2+tlrc.BRIK
(30) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_2+tlrc.BRIK
(31) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_3+tlrc.BRIK
(32) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_3+tlrc.BRIK
(33) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_3+tlrc.BRIK
(34) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_3+tlrc.BRIK
(35) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_3+tlrc.BRIK
(36) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_3+tlrc.BRIK
(37) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_3+tlrc.BRIK
(38) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_3+tlrc.BRIK
(39) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_3+tlrc.BRIK
(40) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_3+tlrc.BRIK
(41) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_4+tlrc.BRIK
(42) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_4+tlrc.BRIK
(43) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_4+tlrc.BRIK
(44) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_4+tlrc.BRIK
(45) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_4+tlrc.BRIK
(46) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_4+tlrc.BRIK
(47) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_4+tlrc.BRIK
(48) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_4+tlrc.BRIK
(49) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_4+tlrc.BRIK
(50) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_4+tlrc.BRIK
(51) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_5+tlrc.BRIK
(52) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_5+tlrc.BRIK
(53) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_5+tlrc.BRIK
(54) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_5+tlrc.BRIK
(55) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_5+tlrc.BRIK
(56) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_5+tlrc.BRIK
(57) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_5+tlrc.BRIK
(58) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_5+tlrc.BRIK
(59) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_5+tlrc.BRIK
(60) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_5+tlrc.BRIK
(61) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_0+tlrc.BRIK
(62) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_0+tlrc.BRIK
(63) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_0+tlrc.BRIK
(64) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_0+tlrc.BRIK
(65) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_0+tlrc.BRIK
(66) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_0+tlrc.BRIK
(67) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_0+tlrc.BRIK
(68) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_0+tlrc.BRIK
(69) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_0+tlrc.BRIK
(70) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_1+tlrc.BRIK
(71) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_1+tlrc.BRIK
(72) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_1+tlrc.BRIK
(73) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_1+tlrc.BRIK
(74) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_1+tlrc.BRIK
(75) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_1+tlrc.BRIK
(76) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_1+tlrc.BRIK
(77) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_1+tlrc.BRIK
(78) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_1+tlrc.BRIK
(79) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_2+tlrc.BRIK
(80) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_2+tlrc.BRIK
(81) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_2+tlrc.BRIK
(82) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_2+tlrc.BRIK
(83) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_2+tlrc.BRIK
(84) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_2+tlrc.BRIK
(85) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_2+tlrc.BRIK
(86) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_2+tlrc.BRIK
(87) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_2+tlrc.BRIK
(88) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_3+tlrc.BRIK
(89) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_3+tlrc.BRIK
(90) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_3+tlrc.BRIK
(91) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_3+tlrc.BRIK
(92) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_3+tlrc.BRIK
(93) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_3+tlrc.BRIK
(94) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_3+tlrc.BRIK
(95) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_3+tlrc.BRIK
(96) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_3+tlrc.BRIK
(97) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_4+tlrc.BRIK
(98) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_4+tlrc.BRIK
(99) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_4+tlrc.BRIK
(100) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_4+tlrc.BRIK
(101) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_4+tlrc.BRIK
(102) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_4+tlrc.BRIK
(103) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_4+tlrc.BRIK
(104) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_4+tlrc.BRIK
(105) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_4+tlrc.BRIK
(106) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_5+tlrc.BRIK
(107) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_5+tlrc.BRIK
(108) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_5+tlrc.BRIK
(109) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_5+tlrc.BRIK
(110) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_5+tlrc.BRIK
(111) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_5+tlrc.BRIK
(112) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_5+tlrc.BRIK
(113) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_5+tlrc.BRIK
(114) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_5+tlrc.BRIK
Output file name (in bucket format): Unbalanced
Any contrast test (1 - Yes, 0 - No)? 1
1st order contrasts have 3 factor(s) collapsed.
Notice: Contrasts for random factor are NOT feasible.
How many 1st-order contrasts? (0 if none) 6
Use factor level to code each term in a contrast. For example, 0100 means the first, third
and fourth factors are collapsed while 2nd factor is at first level.
Label for 1st order contrast No. 1 is: M-F
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 1000
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 2000
Corresponding coefficient (e.g., 1 or -1): -1
Label for 1st order contrast No. 2 is: W-L
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0100
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0200
Corresponding coefficient (e.g., 1 or -1): -1
Label for 1st order contrast No. 3 is: U-N
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0020
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0030
Corresponding coefficient (e.g., 1 or -1): -1
Label for 1st order contrast No. 4 is: P-N
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0010
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0030
Corresponding coefficient (e.g., 1 or -1): -1
Label for 1st order contrast No. 5 is: P-U
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0010
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0020
Corresponding coefficient (e.g., 1 or -1): -1
Label for 1st order contrast No. 6 is: P+U-N
How many terms are involved? 3
Factor index for No. 1 term is (e.g., 0120): 0010
Corresponding coefficient (e.g., 1 or -1): 0.5
Factor index for No. 2 term is (e.g., 0120): 0020
Corresponding coefficient (e.g., 1 or -1): 0.5
Factor index for No. 3 term is (e.g., 0120): 0030
Corresponding coefficient (e.g., 1 or -1): -1
Done with 1st order contrast information.
2nd order contrasts have 2 factor(s) collapsed.
Notice: Contrasts for random factor are NOT feasible.
How many 2nd-order contrasts? (0 if none) 4
Use factor level to code each term in a contrast. For example, 0120 means both the first
and fourth factors are collapsed while 2nd and 3rd factors are at first and second level respectively.
Label for 2nd order contrast No. 1 is: 1P-1U
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0110
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0120
Corresponding coefficient (e.g., 1 or -1): -1
Label for 2nd order contrast No. 2 is: 1P-1N
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0110
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0130
Corresponding coefficient (e.g., 1 or -1): -1
Label for 2nd order contrast No. 3 is: 1U-1N
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0120
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0130
Corresponding coefficient (e.g., 1 or -1): -1
Label for 2nd order contrast No. 4 is: 1P+1U-1N
How many terms are involved? 3
Factor index for No. 1 term is (e.g., 0120): 0110
Corresponding coefficient (e.g., 1 or -1): 0.5
Factor index for No. 2 term is (e.g., 0120): 0120
Corresponding coefficient (e.g., 1 or -1): 0.5
Factor index for No. 3 term is (e.g., 0120): 0130
Corresponding coefficient (e.g., 1 or -1): -1
Done with 2nd order contrast information.
3rd order contrasts have 1 factor(s) collapsed.
Notice: Contrasts for random factor are NOT feasible.
How many 3rd-order contrasts? (0 if none) 3
Use factor level to code each term in a contrast. For example, 1230 means the fourth
factor is collapsed while all the other 3 factors are at first, second and third level respectively.
Label for 3rd order contrast No. 1 is: 11P-11U
How many terms are involved? 2
Factor index for No. 1 is (e.g., 1230): 1110
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 is (e.g., 1230): 1120
Corresponding coefficient (e.g., 1 or -1): -1
Label for 3rd order contrast No. 2 is: 21P-21U
How many terms are involved? 2
Factor index for No. 1 is (e.g., 1230): 2110
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 is (e.g., 1230): 2120
Corresponding coefficient (e.g., 1 or -1): -1
Label for 3rd order contrast No. 3 is: 11P+11U-11U
How many terms are involved? 3
Factor index for No. 1 is (e.g., 1230): 1110
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 is (e.g., 1230): 1120
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 3 is (e.g., 1230): 1130
Corresponding coefficient (e.g., 1 or -1): -0.5
Done with 3rd order contrast information.
Total slices along Z axis: 37.
Running analysis on slice:
#1... done in 20.940792 seconds
#2... done in 22.088587 seconds
#3... done in 30.519483 seconds
#4... done in 30.113871 seconds
#5... done in 32.110031 seconds
#6... done in 31.514884 seconds
#7... done in 32.977658 seconds
#8... done in 25.740496 seconds
#9... done in 35.264541 seconds
#10... done in 33.734351 seconds
#11... done in 31.262763 seconds
#12... done in 29.387097 seconds
#13... done in 29.429768 seconds
#14... done in 29.588746 seconds
#15... done in 36.403589 seconds
#16... done in 34.308602 seconds
#17... done in 27.744658 seconds
#18... done in 33.409188 seconds
#19... done in 38.426463 seconds
#20... done in 33.022749 seconds
#21... done in 29.228422 seconds
#22... done in 28.722091 seconds
#23... done in 31.316471 seconds
#24... done in 32.787141 seconds
#25... done in 34.471142 seconds
#26... done in 24.809763 seconds
#27... done in 26.534936 seconds
#28... done in 35.428467 seconds
#29... done in 27.951760 seconds
#30... done in 22.304551 seconds
#31... done in 29.670128 seconds
#32... done in 29.314881 seconds
#33... done in 32.992775 seconds
#34... done in 30.256143 seconds
#35... done in 27.753511 seconds
#36... done in 27.135561 seconds
#37... done in 29.008655 seconds
Congratulations, job is done!!! Total runtime: 21.528963 minutes...
Output files are Unbalanced+tlrc.*
Please read the following carefully about group analysis setup:
1. If the resolution of your EPI data is near n millimeters, during Talairach conversion use
"the command adwarp -dxyz n" to greatly reduce runtime without sacrificing accuracy.
2. We strongly suggest that factor names be labeled with short (2 or 3 capital letters) names
so that subbrik labels can be shown on AFNI viewer.
3. With nesting, arrange your design in such a way that the last factor is nested within the 1st factor.
4. Each input file should include only one subbrik. We suggest files be
named by reflecting the hierarchy of the experiment design.
5. Currently all of the following terms are modeled: main effects and applicable interactions in various orders, .
6. One covariate is currently allowed in the analysis, which should be in the format of one-column text file.
The column length has to be the same as the total number of input files.
How many factors? 4
Availabe design types:
Type 1: Factorial (crossed) design AXBXCXD - all 4 factors are fixed.
Type 2: Factorial (crossed) design AXBXCXD - only factor D is random. If D is subject it is also
called 3-way design with all 3 factors A, B, and C varying within subject.
Type 3: Mixed design BXCXD(A)- only the nested (4th) factor (usually subject) is random.
Also called 3-way design with factors B and C varying within subject and factor A between subjects.
Type 4: Mixed design BXCXD(A)- D is nested within A, but only the 3rd factor (usually subject)
is random.
Type 5: Mixed design CXD(AXB) - only the nested (4th) factor (usually subject) is random,
but factor D is nested within both factors A and B. If D is subject it is also called 3-way
design with factor D varying within-subject and factors A and B between-subjects.
Notice: This is NOT an exhaustive list of design types for 4-way ANOVA. Other types might be implemented upon request.
Choose design type (1, 2, 3, 4, 5, ...): 3
Is the design balanced? (1 - Yes; 0 - No) 0
Two unbalanced designs are currently allowed: When random factor (subject) is nested within another factor A,
each level of factor A contains a unique and unequal number of subjects -
(1) 3-way ANOVA type 3: BXC(A)
(2) 4-way ANOVA type 3: BXCXD(A)
Does your unbalanced design belong to either of the above types? (1 - Yes; 0 - No) 1
Label for No. 1 factor: Sex
How many levels does factor A (Sex) have? 2
Label for No. 1 level of factor A (Sex) is: male
Label for No. 2 level of factor A (Sex) is: female
Label for No. 2 factor: CN
How many levels does factor B (CN) have? 2
Label for No. 1 level of factor B (CN) is: C1
Label for No. 2 level of factor B (CN) is: C2
Label for No. 3 factor: EM
How many levels does factor C (EM) have? 3
Label for No. 1 level of factor C (EM) is: P
Label for No. 2 level of factor C (EM) is: U
Label for No. 3 level of factor C (EM) is: N
Label for No. 4 factor: Subject
How many levels does factor D (Subject) corresponding to level 1 (male) of factor A (Sex) have? 10
Label for No. 1 level of factor D (Subject) in group 1 of factor A (Sex) is: S1
Label for No. 2 level of factor D (Subject) in group 1 of factor A (Sex) is: S2
Label for No. 3 level of factor D (Subject) in group 1 of factor A (Sex) is: S3
Label for No. 4 level of factor D (Subject) in group 1 of factor A (Sex) is: S4
Label for No. 5 level of factor D (Subject) in group 1 of factor A (Sex) is: S5
Label for No. 6 level of factor D (Subject) in group 1 of factor A (Sex) is: S6
Label for No. 7 level of factor D (Subject) in group 1 of factor A (Sex) is: S7
Label for No. 8 level of factor D (Subject) in group 1 of factor A (Sex) is: S8
Label for No. 9 level of factor D (Subject) in group 1 of factor A (Sex) is: S9
Label for No. 10 level of factor D (Subject) in group 1 of factor A (Sex) is: S10
How many levels does factor D (Subject) corresponding to level 2 (female) of factor A (Sex) have? 9
Label for No. 1 level of factor D (Subject) in group 2 of factor A (Sex) is: S11
Label for No. 2 level of factor D (Subject) in group 2 of factor A (Sex) is: S12
Label for No. 3 level of factor D (Subject) in group 2 of factor A (Sex) is: S13
Label for No. 4 level of factor D (Subject) in group 2 of factor A (Sex) is: S14
Label for No. 5 level of factor D (Subject) in group 2 of factor A (Sex) is: S15
Label for No. 6 level of factor D (Subject) in group 2 of factor A (Sex) is: S16
Label for No. 7 level of factor D (Subject) in group 2 of factor A (Sex) is: S17
Label for No. 8 level of factor D (Subject) in group 2 of factor A (Sex) is: S18
Label for No. 9 level of factor D (Subject) in group 2 of factor A (Sex) is: S19
Enter the number of observations per cell (treatment or factor level combination): 1
Any covariate (concomitant variable)? (1 - Yes; 0 - No) 0
All input files are supposed to contain only one subbrik.
There should be totally 114 input files.
Correct? (1 - Yes; 0 - No) 1
(1) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_0+tlrc.BRIK
(2) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_0+tlrc.BRIK
(3) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_0+tlrc.BRIK
(4) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_0+tlrc.BRIK
(5) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_0+tlrc.BRIK
(6) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_0+tlrc.BRIK
(7) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_0+tlrc.BRIK
(8) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_0+tlrc.BRIK
(9) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_0+tlrc.BRIK
(10) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_0+tlrc.BRIK
(11) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_1+tlrc.BRIK
(12) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_1+tlrc.BRIK
(13) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_1+tlrc.BRIK
(14) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_1+tlrc.BRIK
(15) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_1+tlrc.BRIK
(16) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_1+tlrc.BRIK
(17) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_1+tlrc.BRIK
(18) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_1+tlrc.BRIK
(19) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_1+tlrc.BRIK
(20) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_1+tlrc.BRIK
(21) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_2+tlrc.BRIK
(22) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_2+tlrc.BRIK
(23) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_2+tlrc.BRIK
(24) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_2+tlrc.BRIK
(25) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_2+tlrc.BRIK
(26) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_2+tlrc.BRIK
(27) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_2+tlrc.BRIK
(28) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_2+tlrc.BRIK
(29) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_2+tlrc.BRIK
(30) factor combination:
factor A (Sex) at level male
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_2+tlrc.BRIK
(31) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_3+tlrc.BRIK
(32) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_3+tlrc.BRIK
(33) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_3+tlrc.BRIK
(34) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_3+tlrc.BRIK
(35) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_3+tlrc.BRIK
(36) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_3+tlrc.BRIK
(37) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_3+tlrc.BRIK
(38) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_3+tlrc.BRIK
(39) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_3+tlrc.BRIK
(40) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_3+tlrc.BRIK
(41) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_4+tlrc.BRIK
(42) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_4+tlrc.BRIK
(43) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_4+tlrc.BRIK
(44) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_4+tlrc.BRIK
(45) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_4+tlrc.BRIK
(46) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_4+tlrc.BRIK
(47) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_4+tlrc.BRIK
(48) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_4+tlrc.BRIK
(49) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_4+tlrc.BRIK
(50) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_4+tlrc.BRIK
(51) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S1
at repeat 1
is: m.AlvaranP051303_5+tlrc.BRIK
(52) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S2
at repeat 1
is: m.AstorA072903_5+tlrc.BRIK
(53) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S3
at repeat 1
is: m.BlumenkronF070103_5+tlrc.BRIK
(54) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S4
at repeat 1
is: m.CabrerraD121002_5+tlrc.BRIK
(55) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S5
at repeat 1
is: m.ChieppaM112703_5+tlrc.BRIK
(56) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S6
at repeat 1
is: m.CrawfordA020604_5+tlrc.BRIK
(57) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S7
at repeat 1
is: m.DeleonM062403_5+tlrc.BRIK
(58) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S8
at repeat 1
is: m.DezwartJ120302_5+tlrc.BRIK
(59) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S9
at repeat 1
is: m.DuaneD010904_5+tlrc.BRIK
(60) factor combination:
factor A (Sex) at level male
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S10
at repeat 1
is: m.DudekJ062303_5+tlrc.BRIK
(61) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_0+tlrc.BRIK
(62) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_0+tlrc.BRIK
(63) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_0+tlrc.BRIK
(64) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_0+tlrc.BRIK
(65) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_0+tlrc.BRIK
(66) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_0+tlrc.BRIK
(67) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_0+tlrc.BRIK
(68) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_0+tlrc.BRIK
(69) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level P
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_0+tlrc.BRIK
(70) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_1+tlrc.BRIK
(71) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_1+tlrc.BRIK
(72) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_1+tlrc.BRIK
(73) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_1+tlrc.BRIK
(74) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_1+tlrc.BRIK
(75) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_1+tlrc.BRIK
(76) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_1+tlrc.BRIK
(77) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_1+tlrc.BRIK
(78) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level U
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_1+tlrc.BRIK
(79) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_2+tlrc.BRIK
(80) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_2+tlrc.BRIK
(81) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_2+tlrc.BRIK
(82) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_2+tlrc.BRIK
(83) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_2+tlrc.BRIK
(84) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_2+tlrc.BRIK
(85) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_2+tlrc.BRIK
(86) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_2+tlrc.BRIK
(87) factor combination:
factor A (Sex) at level female
factor B (CN) at level C1
factor C (EM) at level N
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_2+tlrc.BRIK
(88) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_3+tlrc.BRIK
(89) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_3+tlrc.BRIK
(90) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_3+tlrc.BRIK
(91) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_3+tlrc.BRIK
(92) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_3+tlrc.BRIK
(93) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_3+tlrc.BRIK
(94) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_3+tlrc.BRIK
(95) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_3+tlrc.BRIK
(96) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level P
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_3+tlrc.BRIK
(97) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_4+tlrc.BRIK
(98) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_4+tlrc.BRIK
(99) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_4+tlrc.BRIK
(100) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_4+tlrc.BRIK
(101) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_4+tlrc.BRIK
(102) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_4+tlrc.BRIK
(103) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_4+tlrc.BRIK
(104) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_4+tlrc.BRIK
(105) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level U
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_4+tlrc.BRIK
(106) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S11
at repeat 1
is: f.AhnS102803_5+tlrc.BRIK
(107) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S12
at repeat 1
is: f.BosettiF090103_5+tlrc.BRIK
(108) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S13
at repeat 1
is: f.BrewerD040113_5+tlrc.BRIK
(109) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S14
at repeat 1
is: f.BrownC011403_5+tlrc.BRIK
(110) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S15
at repeat 1
is: f.ChapinH090103_5+tlrc.BRIK
(111) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S16
at repeat 1
is: f.DakinK101403_5+tlrc.BRIK
(112) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S17
at repeat 1
is: f.DanubeC050103_5+tlrc.BRIK
(113) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S18
at repeat 1
is: f.GauriT121603_5+tlrc.BRIK
(114) factor combination:
factor A (Sex) at level female
factor B (CN) at level C2
factor C (EM) at level N
factor D (Subject) at level S19
at repeat 1
is: f.GoltzM111103_5+tlrc.BRIK
Output file name (in bucket format): Unbalanced
Any contrast test (1 - Yes, 0 - No)? 1
1st order contrasts have 3 factor(s) collapsed.
Notice: Contrasts for random factor are NOT feasible.
How many 1st-order contrasts? (0 if none) 6
Use factor level to code each term in a contrast. For example, 0100 means the first, third
and fourth factors are collapsed while 2nd factor is at first level.
Label for 1st order contrast No. 1 is: M-F
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 1000
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 2000
Corresponding coefficient (e.g., 1 or -1): -1
Label for 1st order contrast No. 2 is: W-L
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0100
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0200
Corresponding coefficient (e.g., 1 or -1): -1
Label for 1st order contrast No. 3 is: U-N
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0020
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0030
Corresponding coefficient (e.g., 1 or -1): -1
Label for 1st order contrast No. 4 is: P-N
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0010
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0030
Corresponding coefficient (e.g., 1 or -1): -1
Label for 1st order contrast No. 5 is: P-U
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0010
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0020
Corresponding coefficient (e.g., 1 or -1): -1
Label for 1st order contrast No. 6 is: P+U-N
How many terms are involved? 3
Factor index for No. 1 term is (e.g., 0120): 0010
Corresponding coefficient (e.g., 1 or -1): 0.5
Factor index for No. 2 term is (e.g., 0120): 0020
Corresponding coefficient (e.g., 1 or -1): 0.5
Factor index for No. 3 term is (e.g., 0120): 0030
Corresponding coefficient (e.g., 1 or -1): -1
Done with 1st order contrast information.
2nd order contrasts have 2 factor(s) collapsed.
Notice: Contrasts for random factor are NOT feasible.
How many 2nd-order contrasts? (0 if none) 4
Use factor level to code each term in a contrast. For example, 0120 means both the first
and fourth factors are collapsed while 2nd and 3rd factors are at first and second level respectively.
Label for 2nd order contrast No. 1 is: 1P-1U
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0110
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0120
Corresponding coefficient (e.g., 1 or -1): -1
Label for 2nd order contrast No. 2 is: 1P-1N
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0110
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0130
Corresponding coefficient (e.g., 1 or -1): -1
Label for 2nd order contrast No. 3 is: 1U-1N
How many terms are involved? 2
Factor index for No. 1 term is (e.g., 0120): 0120
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 term is (e.g., 0120): 0130
Corresponding coefficient (e.g., 1 or -1): -1
Label for 2nd order contrast No. 4 is: 1P+1U-1N
How many terms are involved? 3
Factor index for No. 1 term is (e.g., 0120): 0110
Corresponding coefficient (e.g., 1 or -1): 0.5
Factor index for No. 2 term is (e.g., 0120): 0120
Corresponding coefficient (e.g., 1 or -1): 0.5
Factor index for No. 3 term is (e.g., 0120): 0130
Corresponding coefficient (e.g., 1 or -1): -1
Done with 2nd order contrast information.
3rd order contrasts have 1 factor(s) collapsed.
Notice: Contrasts for random factor are NOT feasible.
How many 3rd-order contrasts? (0 if none) 3
Use factor level to code each term in a contrast. For example, 1230 means the fourth
factor is collapsed while all the other 3 factors are at first, second and third level respectively.
Label for 3rd order contrast No. 1 is: 11P-11U
How many terms are involved? 2
Factor index for No. 1 is (e.g., 1230): 1110
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 is (e.g., 1230): 1120
Corresponding coefficient (e.g., 1 or -1): -1
Label for 3rd order contrast No. 2 is: 21P-21U
How many terms are involved? 2
Factor index for No. 1 is (e.g., 1230): 2110
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 is (e.g., 1230): 2120
Corresponding coefficient (e.g., 1 or -1): -1
Label for 3rd order contrast No. 3 is: 11P+11U-11U
How many terms are involved? 3
Factor index for No. 1 is (e.g., 1230): 1110
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 2 is (e.g., 1230): 1120
Corresponding coefficient (e.g., 1 or -1): 1
Factor index for No. 3 is (e.g., 1230): 1130
Corresponding coefficient (e.g., 1 or -1): -0.5
Done with 3rd order contrast information.
Total slices along Z axis: 37.
Running analysis on slice:
#1... done in 20.940792 seconds
#2... done in 22.088587 seconds
#3... done in 30.519483 seconds
#4... done in 30.113871 seconds
#5... done in 32.110031 seconds
#6... done in 31.514884 seconds
#7... done in 32.977658 seconds
#8... done in 25.740496 seconds
#9... done in 35.264541 seconds
#10... done in 33.734351 seconds
#11... done in 31.262763 seconds
#12... done in 29.387097 seconds
#13... done in 29.429768 seconds
#14... done in 29.588746 seconds
#15... done in 36.403589 seconds
#16... done in 34.308602 seconds
#17... done in 27.744658 seconds
#18... done in 33.409188 seconds
#19... done in 38.426463 seconds
#20... done in 33.022749 seconds
#21... done in 29.228422 seconds
#22... done in 28.722091 seconds
#23... done in 31.316471 seconds
#24... done in 32.787141 seconds
#25... done in 34.471142 seconds
#26... done in 24.809763 seconds
#27... done in 26.534936 seconds
#28... done in 35.428467 seconds
#29... done in 27.951760 seconds
#30... done in 22.304551 seconds
#31... done in 29.670128 seconds
#32... done in 29.314881 seconds
#33... done in 32.992775 seconds
#34... done in 30.256143 seconds
#35... done in 27.753511 seconds
#36... done in 27.135561 seconds
#37... done in 29.008655 seconds
Congratulations, job is done!!! Total runtime: 21.528963 minutes...
Output files are Unbalanced+tlrc.*